filling_in_a_tool_form
Table of Contents
Filling in a tool form
HiPathia integrates two different pathway tools: Differential signaling and Prediction. Both pathway tools can be accessed from the main menu bar, by clicking on their respective names (see Workflow).
The main page of a pathway tool is its filling in form. This form includes all the information and parameters that the tool needs to process a job. The form is divided in different panels:
- Input data
- Design data
- Species
- Parameters
- Pathways
- Job information
Input data
In the input data panel, we must introduce the expression data and, optionally, the variant data.
The expression data can be either an:
- Expression matrix provided by yourself (see how to upload files in Upload your data), or
- Expression vector taken from an expression database. In this case, we must choose the tissue database and tissue names.
The variant data must be a VCF file.
Design data
The design data panel allows you to choose the kind of experiment you want to perform. You can choose between two main experimental designs:
- Two group comparison:
- Correlation with continuous variable:
Launching a job
filling_in_a_tool_form.txt · Last modified: 2017/05/24 15:27 by 127.0.0.1