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worked_example2 [2016/02/09 14:08] – fsalavertworked_example2 [2017/05/24 15:27] (current) – external edit 127.0.0.1
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   * Upload the file as is shown in the [[Upload your data|Upload your data]] section and launch a job with that file.    * Upload the file as is shown in the [[Upload your data|Upload your data]] section and launch a job with that file. 
  
-{{ :ex2run.png?600 |}}+{{ :ex2run.png?900 |}}
  
   * A job will appear on the right and will be processed.   * A job will appear on the right and will be processed.
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 The visualizer highlights modified genes to help locate them (//figure 2//). The visualizer highlights modified genes to help locate them (//figure 2//).
  
-{{ :tg_gates_4.png?600 |}}+{{ :ex2highlightnodes.png?800 |}}
  
-**Figure 2:** **A:** ErbB signaling pathway. **B:** Detail of ESR1 modification on the pathway. Note how CellMaps marks perturbed genes.+**Figure 2:** **A:** Estrogen signaling pathway. Detail of ESR1 modification on the pathway. Note how the viewer marks perturbed genes.
  
   * Perform the inhibition by pressing update button. Those pathways and circuits that have been modified are marked in bold. Red or blue arrows indicate if those changes are or not significant (overactivated path or repressed).   * Perform the inhibition by pressing update button. Those pathways and circuits that have been modified are marked in bold. Red or blue arrows indicate if those changes are or not significant (overactivated path or repressed).
worked_example2.1455026904.txt.gz · Last modified: 2017/05/24 15:27 (external edit)