Differences

This shows you the differences between two versions of the page.

--- worked_example2 [2016/02/09 14:05] – fsalavert
+++ worked_example2 [2017/05/24 15:27] (current) – external edit 127.0.0.1
@@ Line 23: / Line 23: @@
   * Upload the file as is shown in the [[Upload your data|Upload your data]] section and launch a job with that file.
-{{ :ex2run.png?600 |}}
+{{ :ex2run.png?900 |}}
   * A job will appear on the right and will be processed.
@@ Line 46: / Line 46: @@
 **Figure 1:** Gene signal modification. Screenshot of gene selection panel. Note when we modify gene activity without drugs, no// Additional drug effect// appears.
-CellMaps visualizer highlights modified genes to help locate them (//figure 2//).
+The visualizer highlights modified genes to help locate them (//figure 2//).
-{{ :tg_gates_4.png?600 |}}
+{{ :ex2highlightnodes.png?800 |}}
-**Figure 2:** **A:** ErbB signaling pathway. **B:** Detail of ESR1 modification on the pathway. Note how CellMaps marks perturbed genes.
+**Figure 2:** **A:** Estrogen signaling pathway. Detail of ESR1 modification on the pathway. Note how the viewer marks perturbed genes.
   * Perform the inhibition by pressing update button. Those pathways and circuits that have been modified are marked in bold. Red or blue arrows indicate if those changes are or not significant (overactivated path or repressed).