PathAct

User Tools

Site Tools

Trace:
data_matrix_expression_file

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revisionPrevious revision
Next revision		Previous revision
data_matrix_expression_file [2016/04/06 15:05] – fsalavertdata_matrix_expression_file [2017/05/24 15:27] (current) – external edit 127.0.0.1
Line 6: Line 6:
  
  
-This file has two columns if there is only one sample, and more than two columns if there are many samples. First line is a header and must contain the sample names. The first column correspond to gene, probe or protein Ids from:+This file has two columns if there is only one sample, and more than two columns if there are many samples. 
 +The first line is a header and must contain the sample names.  
 +The first column corresponds to genes, probes or proteins, and the following IDs are accepted:
  
   - Ensembl gene   - Ensembl gene
Line 21: Line 23:
 Here is an example of a file with only one example: Here is an example of a file with only one example:
  
-<code - expression.txt>+<code>
 id sampleName id sampleName
 1 0.3 1 0.3
Line 30: Line 32:
 And here is another example with more than one sample: And here is another example with more than one sample:
  
-<code - expression-multi.txt>+<code>
 id sample1 sample2 sample3 id sample1 sample2 sample3
 1 0.31 0.6 0.24 1 0.31 0.6 0.24
Line 38: Line 40:
 </code> </code>
  
-Here you can download real example file: 
  
 +
 +You can download an usable example file from {{:brca_example1_40_exp.txt|here}}
 +
 +**Note**: If probe expression values are provided, these are recodified to gene expression values, obtained as the average value of all the probes mapping in the gene. 
  
  
  
data_matrix_expression_file.1459955153.txt.gz · Last modified: 2017/05/24 15:27 (external edit)