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data_matrix_expression_file [2016/04/06 14:36] – fsalavertdata_matrix_expression_file [2017/05/24 15:27] (current) – external edit 127.0.0.1
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-This file has two columns if there is only one sample, and more than two columns if there are many samples. First line is a header and must contain the names of the samples. The first column correspond to gene, probe or protein Ids from:+This file has two columns if there is only one sample, and more than two columns if there are many samples. 
 +The first line is a header and must contain the sample names.  
 +The first column corresponds to genes, probes or proteins, and the following IDs are accepted:
  
   - Ensembl gene   - Ensembl gene
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 Here is an example of a file with only one example: Here is an example of a file with only one example:
  
-<code - expression.txt>+<code>
 id sampleName id sampleName
 1 0.3 1 0.3
 2 1 2 1
-3 0.7+3 0.73
 </code> </code>
  
 And here is another example with more than one sample: And here is another example with more than one sample:
  
-<code - expression-multi.txt>+<code>
 id sample1 sample2 sample3 id sample1 sample2 sample3
-1 0.3 0.6 0.2 +1 0.31 0.6 0.24 
-2 1 0.8 0.9+2 1 0.81 0.91
 3 0.7 0.9 0.3 3 0.7 0.9 0.3
 +4 0.23 0.45 0.33
 </code> </code>
 +
 +
 +
 +You can download an usable example file from {{:brca_example1_40_exp.txt|here}}
 +
 +**Note**: If probe expression values are provided, these are recodified to gene expression values, obtained as the average value of all the probes mapping in the gene. 
 +
  
  
data_matrix_expression_file.1459953371.txt.gz · Last modified: 2017/05/24 15:27 (external edit)